PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001228G0360
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 277aa    MW: 29720.3 Da    PI: 8.6216
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001228G0360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132.1e-35261192103
                      HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                      Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k+ll
  PH01001228G0360  26 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEKQLL 110
                      9********************6667*****************************************999.........**************** PP

                      XXXXXXXXX CS
     HSF_DNA-bind  95 ekikrkkse 103
                      ++i+r+k++
  PH01001228G0360 111 CEIHRRKTS 119
                      ******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3615111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-5822116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.31E-3123116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3026116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDRCGSWSEC DAAAQAAAQK AVPAPFLTKT YQLVDDPATD HIVSWGDDRV STFVVWRPPE  60
FARDILPNYF KHNNFSSFVR QLNTYGFRKV VPERWEFANE FFRKGEKQLL CEIHRRKTSS  120
ASPELAHMRK LYNDIIYFVQ NHVRPVAPSP AAAAFLQGLG LQARKKPAAA NGLNNSGGST  180
TSSSSLTIAE EPSPPPQQLA ADKSGGEAGS APTKLFGVHL SAAPCGAGSK RPPSPEEQPP  240
TSPATKPRLV LESDDLSLTM APSSQPSAAS SPASTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-231611820131Heat shock factor protein 1
5d5v_B6e-231611820131Heat shock factor protein 1
5d5v_D6e-231611820131Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411901e-143AK241190.1 Oryza sativa Japonica Group cDNA, clone: J065120N14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658884.12e-71PREDICTED: heat stress transcription factor B-4b-like
RefseqXP_003576600.13e-71PREDICTED: heat stress transcription factor B-4c-like
SwissprotQ67U942e-70HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLM7ZC391e-126M7ZC39_TRIUA; Heat stress transcription factor B-4c
STRINGGSMUA_Achr3P07020_0012e-87(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.14e-60heat shock transcription factor B4